If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 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'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ), 'gf_id' => 'HOM05D000787', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000787' ), 'data_identifier' => 'HOM05D000787', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000787', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '752', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21220' => 'bna', 'A03p67910' => 'bna', 'A06p09470' => 'bna', 'A07p01100' => 'bna', 'A07p01130' => 'bna', 'A07p28040' => 'bna', 'A07p42870' => 'bna', 'A09p16300' => 'bna', 'A09p59220' => 'bna', 'A09p64160' => 'bna', 'A10p03510' => 'bna', 'Aa31LG1G19750' => 'aar', 'Aa31LG1G2730' => 'aar', 'Aa31LG2G90' => 'aar', 'Aa31LG4G7360' => 'aar', 'Aa31LG8G16600' => 'aar', 'Actinidia02332' => 'ach', 'Actinidia09749' => 'ach', 'Actinidia10797' => 'ach', 'Actinidia11873' => 'ach', 'Actinidia13733' => 'ach', 'Actinidia15218' => 'ach', 'Actinidia21283' => 'ach', 'Actinidia25260' => 'ach', 'Actinidia26880' => 'ach', 'Actinidia29486' => 'ach', 'Actinidia29796' => 'ach', 'Actinidia39262' => 'ach', 'Actinidia39723' => 'ach', 'Ah.01g013540' => 'amhyb', 'Ah.09g234450' => 'amhyb', 'AL1G14760' => 'aly', 'AL1G23220' => 'aly', 'AL2G13510' => 'aly', 'AL2G37530' => 'aly', 'AL3G48640' => 'aly', 'AL3G48650' => 'aly', 'Aqoxy1G02911' => 'aox', 'Aqoxy1G04179' => 'aox', 'Aqoxy6G00311' => 'aox', 'Aqoxy7G01246' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1X31DU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22AMRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42BGRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4GF8V7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66YX65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78F3YR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78SDCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8A7NWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F40DCN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI6PPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8WHKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NASX6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV0TMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WLAS15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y5BWXR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQLB0K' => 'arhy', 'AT1G05010' => 'ath', 'AT1G12010' => 'ath', 'AT1G62380' => 'ath', 'AT1G77330' => 'ath', 'AT2G19590' => 'ath', 'ATR0033G035' => 'atr', 'ATR0059G037' => 'atr', 'ATR0584G035' => 'atr', 'ATR0584G229' => 'atr', 'Atru.chr10.2315' => 'acertr', 'Atru.chr13.1558' => 'acertr', 'Atru.chr6.3261' => 'acertr', 'Atru.chr7.1569' => 'acertr', 'AUR62007720' => 'cqu', 'AUR62012765' => 'cqu', 'AUR62013422' => 'cqu', 'AUR62015125' => 'cqu', 'AUR62017585' => 'cqu', 'AUR62021892' => 'cqu', 'AUR62027482' => 'cqu', 'AUR62033994' => 'cqu', 'BcaB02g06435' => 'bca', 'BcaB02g07103' => 'bca', 'BcaB02g10101' => 'bca', 'BcaB03g16747' => 'bca', 'BcaB05g23752' => 'bca', 'BcaB05g25040' => 'bca', 'BcaB05g25041' => 'bca', 'BcaB07g31323' => 'bca', 'BcaB08g34875' => 'bca', 'BcaB08g37435' => 'bca', 'BcaC02g10469' => 'bca', 'BcaC03g14904' => 'bca', 'BcaC03g15731' => 'bca', 'BcaC04g22395' => 'bca', 'BcaC05g25233' => 'bca', 'BcaC06g31898' => 'bca', 'BcaC06g36602' => 'bca', 'BcaC07g41245' => 'bca', 'BcaC07g41738' => 'bca', 'BcaC07g41754' => 'bca', 'BcaC08g45480' => 'bca', 'BcaC09g52149' => 'bca', 'BcaNung06792' => 'bca', 'BolC1t00517H' => 'bol', 'BolC1t05355H' => 'bol', 'BolC2t09479H' => 'bol', 'BolC4t24396H' => 'bol', 'BolC5t29100H' => 'bol', 'BolC5t29864H' => 'bol', 'BolC6t38269H' => 'bol', 'BolC6t38270H' => 'bol', 'BolC6t40167H' => 'bol', 'BolC7t40638H' => 'bol', 'BolC8t51812H' => 'bol', 'BolC8t52314H' => 'bol', 'BolC8t52317H' => 'bol', 'BolC9t54884H' => 'bol', 'BraA01t02679Z' => 'bra', 'BraA02t07141Z' => 'bra', 'BraA06t24134Z' => 'bra', 'BraA07t30448Z' => 'bra', 'BraA07t31808Z' => 'bra', 'BraA09t37268Z' => 'bra', 'BraA09t41306Z' => 'bra', 'BraA09t41761Z' => 'bra', 'BraA10t42628Z' => 'bra', 'C01p05370' => 'bna', 'C02p23800' => 'bna', 'C02p34490' => 'bna', 'C04p20570' => 'bna', 'C04p28520' => 'bna', 'C05p03200' => 'bna', 'C05p11180' => 'bna', 'C06p22820' => 'bna', 'C06p31310' => 'bna', 'C06p51490' => 'bna', 'C07p02280' => 'bna', 'C08p42510' => 'bna', 'C08p47770' => 'bna', 'C09p19810' => 'bna', 'C09p46480' => 'bna', 'CAN.G1014.55' => 'can', 'CAN.G123.5' => 'can', 'CAN.G1541.3' => 'can', 'CAN.G1622.1' => 'can', 'CAN.G2153.1' => 'can', 'CAN.G283.5' => 'can', 'CAN.G290.27' => 'can', 'CAN.G526.13' => 'can', 'CAN.G531.5' => 'can', 'CAN.G569.1' => 'can', 'CAN.G784.1' => 'can', 'CANSAT25G1960' => 'cansat', 'CANSAT56G0763' => 'cansat', 'CANSAT56G4520' => 'cansat', 'CANSAT64G1797' => 'cansat', 'CARHR004440' => 'chi', 'CARHR012350' => 'chi', 'CARHR049540' => 'chi', 'CARHR070820' => 'chi', 'CARHR110030' => 'chi', 'Carub.0001s0427' => 'cru', 'Carub.0001s1169' => 'cru', 'Carub.0002s0260' => 'cru', 'Carub.0002s2421' => 'cru', 'Carub.0003s3388' => 'cru', 'Ca_00701_v3' => 'car', 'Ca_16370_v3' => 'car', 'Ca_16605_v3' => 'car', 'Ca_21057_v3' => 'car', 'Ca_27612_v3' => 'car', 'Cc00_g25170' => 'ccan', 'Cc00_g25580' => 'ccan', 'Cc00_g25830' => 'ccan', 'Cc05_g02890' => 'ccan', 'Cc05_g02900' => 'ccan', 'Cc05_g02920' => 'ccan', 'Cc06_g11230' => 'ccan', 'Cc09_g01110' => 'ccan', 'Cc10_g12710' => 'ccan', 'Cc10_g12720' => 'ccan', 'CDE04G1518' => 'cde', 'CDE06G0416' => 'cde', 'Cfa000138' => 'cfa', 'Cfa003105' => 'cfa', 'Cfa014314' => 'cfa', 'Cfa014315' => 'cfa', 'Cfa018125' => 'cfa', 'Ciclev10001927m.g' => 'ccl', 'Ciclev10008993m.g' => 'ccl', 'Ciclev10015962m.g' => 'ccl', 'Ciclev10015965m.g' => 'ccl', 'CiPaw.03G154800' => 'cil', 'CiPaw.04G109700' => 'cil', 'CiPaw.04G109800' => 'cil', 'CiPaw.04G109900' => 'cil', 'CiPaw.04G110000' => 'cil', 'CiPaw.04G110100' => 'cil', 'CiPaw.04G110200' => 'cil', 'CiPaw.04G151400' => 'cil', 'CiPaw.09G099700' => 'cil', 'CiPaw.10G075500' => 'cil', 'CiPaw.15G031600' => 'cil', 'CiPaw.15G031900' => 'cil', 'CiPaw.16G023100' => 'cil', 'ClCG01G021590' => 'cla', 'ClCG02G018080' => 'cla', 'ClCG09G011190' => 'cla', 'ClCG11G001830' => 'cla', 'ClCG11G015950' => 'cla', 'COL.COLO4_08842' => 'col', 'COL.COLO4_18217' => 'col', 'COL.COLO4_21889' => 'col', 'COL.COLO4_31848' => 'col', 'Cpa.g.sc132.27' => 'cpa', 'Cpa.g.sc152.58' => 'cpa', 'Cpa.g.sc64.148' => 'cpa', 'CsaV3_2G001540' => 'csa', 'CsaV3_4G028040' => 'csa', 'CsaV3_6G015400' => 'csa', 'CsaV3_6G037780' => 'csa', 'CsaV3_6G048630' => 'csa', 'CsaV3_UNG115910' => 'csa', 'CSS0000425' => 'camsi', 'CSS0002163' => 'camsi', 'CSS0004829' => 'camsi', 'CSS0008883' => 'camsi', 'CSS0016175' => 'camsi', 'CSS0017231' => 'camsi', 'CSS0022476' => 'camsi', 'CSS0023813' => 'camsi', 'CSS0027544' => 'camsi', 'CSS0030701' => 'camsi', 'CSS0031074' => 'camsi', 'CSS0031289' => 'camsi', 'CSS0031656' => 'camsi', 'CSS0034471' => 'camsi', 'CSS0042460' => 'camsi', 'DCAR_004833' => 'dca', 'DCAR_010681' => 'dca', 'DCAR_014372' => 'dca', 'DCAR_014440' => 'dca', 'DCAR_019257' => 'dca', 'DCAR_019741' => 'dca', 'DCAR_030886' => 'dca', 'Dinv08715' => 'din', 'Dinv08716' => 'din', 'Dinv13949' => 'din', 'Dinv14677' => 'din', 'Dinv20115' => 'din', 'Dinv27278' => 'din', 'Dinv36754' => 'din', 'Dinv39752' => 'din', 'Dinv42306' => 'din', 'Duzib041G0586' => 'dzi', 'Duzib093G0135' => 'dzi', 'Duzib116G0015' => 'dzi', 'Duzib133G0459' => 'dzi', 'Duzib138G0706' => 'dzi', 'Duzib160G0662' => 'dzi', 'Duzib168G0705' => 'dzi', 'Duzib211G0359' => 'dzi', 'Duzib211G0593' => 'dzi', 'Duzib235G1309' => 'dzi', 'ECA234G4642' => 'eca', 'ECA240G2850' => 'eca', 'ECA240G4727' => 'eca', 'ECA246G0211' => 'eca', 'EL10Ac1g01343' => 'bvu', 'EL10Ac8g19237' => 'bvu', 'EL10Ac8g20144' => 'bvu', 'EL10Ac9g22829' => 'bvu', 'Eucgr.C00906' => 'egr', 'Eucgr.C03651' => 'egr', 'Eucgr.C03652' => 'egr', 'Eucgr.C03654' => 'egr', 'Eucgr.C03656' => 'egr', 'Eucgr.C03875' => 'egr', 'Eucgr.C03881' => 'egr', 'Eucgr.C03886' => 'egr', 'Eucgr.D01368' => 'egr', 'Eucgr.E03977' => 'egr', 'Eucgr.F03837' => 'egr', 'Eucgr.F03839' => 'egr', 'Eucgr.K00739' => 'egr', 'Eucgr.K00740' => 'egr', 'Eucgr.K00741' => 'egr', 'Eucgr.K00742' => 'egr', 'Eucgr.K00743' => 'egr', 'Eucgr.K00746' => 'egr', 'Eucgr.K00747' => 'egr', 'Eucgr.K00749' => 'egr', 'Eucgr.K00750' => 'egr', 'Eucgr.L03357' => 'egr', 'Eucgr.L03358' => 'egr', 'FAN02G0973' => 'fan', 'FAN05G3370' => 'fan', 'FAN05G4372' => 'fan', 'FAN09G0375' => 'fan', 'FAN14G2237' => 'fan', 'FAN15G0494' => 'fan', 'FAN19G2940' => 'fan', 'FAN20G2693' => 'fan', 'FAN21G3420' => 'fan', 'FAN23G1651' => 'fan', 'FAN24G0752' => 'fan', 'FAN25G0939' => 'fan', 'FAN26G0149' => 'fan', 'FAN26G2807' => 'fan', 'FAN27G1808' => 'fan', 'FAN28G0910' => 'fan', 'FAN28G1278' => 'fan', 'FAN28G1382' => 'fan', 'FvH4_1g07181' => 'fve', 'FvH4_1g07190' => 'fve', 'FvH4_2g27800' => 'fve', 'FvH4_3g01280' => 'fve', 'FvH4_6g42090' => 'fve', 'Glyma.02G268000' => 'gma', 'Glyma.02G268200' => 'gma', 'Glyma.02G268400' => 'gma', 'Glyma.02G268500' => 'gma', 'Glyma.04G245900' => 'gma', 'Glyma.05G222400' => 'gma', 'Glyma.06G117200' => 'gma', 'Glyma.07G129000' => 'gma', 'Glyma.07G264200' => 'gma', 'Glyma.08G029200' => 'gma', 'Glyma.08G050400' => 'gma', 'Glyma.09G008400' => 'gma', 'Glyma.14G048900' => 'gma', 'Glyma.14G049000' => 'gma', 'Glyma.14G049500' => 'gma', 'Glyma.15G112700' => 'gma', 'Glyma.17G009800' => 'gma', 'Gohir.A02G071300' => 'ghi', 'Gohir.A02G071400' => 'ghi', 'Gohir.A02G110200' => 'ghi', 'Gohir.A05G173900' => 'ghi', 'Gohir.A06G152100' => 'ghi', 'Gohir.A07G010400' => 'ghi', 'Gohir.A07G083900' => 'ghi', 'Gohir.A07G084000' => 'ghi', 'Gohir.A07G084100' => 'ghi', 'Gohir.A07G187400' => 'ghi', 'Gohir.A08G050300' => 'ghi', 'Gohir.A11G152600' => 'ghi', 'Gohir.D02G078400' => 'ghi', 'Gohir.D02G078600' => 'ghi', 'Gohir.D03G069001' => 'ghi', 'Gohir.D05G176900' => 'ghi', 'Gohir.D06G158350' => 'ghi', 'Gohir.D06G158401' => 'ghi', 'Gohir.D06G158451' => 'ghi', 'Gohir.D07G010700' => 'ghi', 'Gohir.D07G090001' => 'ghi', 'Gohir.D07G090100' => 'ghi', 'Gohir.D07G090200' => 'ghi', 'Gohir.D07G194300' => 'ghi', 'Gohir.D08G060200' => 'ghi', 'Gohir.D11G159500' => 'ghi', 'Gorai.001G011100' => 'gra', 'Gorai.001G096200' => 'gra', 'Gorai.001G096300' => 'gra', 'Gorai.001G096400' => 'gra', 'Gorai.001G217400' => 'gra', 'Gorai.004G062100' => 'gra', 'Gorai.005G087900' => 'gra', 'Gorai.005G088000' => 'gra', 'Gorai.007G170100' => 'gra', 'Gorai.009G182300' => 'gra', 'Gorai.010G184900' => 'gra', 'Gorai.010G185000' => 'gra', 'Gorai.010G185100' => 'gra', 'Gorai.013G107500' => 'gra', 'GSVIVG01006065001' => 'vvi', 'GSVIVG01008811001' => 'vvi', 'GSVIVG01015220001' => 'vvi', 'GSVIVG01030508001' => 'vvi', 'HanXRQChr03g0060761' => 'han', 'HanXRQChr05g0129221' => 'han', 'HanXRQChr05g0149301' => 'han', 'HanXRQChr05g0149321' => 'han', 'HanXRQChr05g0161411' => 'han', 'HanXRQChr10g0306111' => 'han', 'HanXRQChr10g0306121' => 'han', 'HanXRQChr11g0334761' => 'han', 'HanXRQChr15g0468621' => 'han', 'HanXRQChr15g0470891' => 'han', 'Haze_06886' => 'cav', 'Haze_12763' => 'cav', 'Haze_25895' => 'cav', 'Hma1.2p1_0014F.1_g010180' => 'hma', 'Hma1.2p1_0177F.1_g078090' => 'hma', 'Hma1.2p1_0298F.1_g117390' => 'hma', 'Hma1.2p1_0420F.1_g149650' => 'hma', 'Hma1.2p1_0445F.1_g154290' => 'hma', 'Hma1.2p1_0660F.1_g197420' => 'hma', 'Hma1.2p1_0800F.1_g220030' => 'hma', 'Hma1.2p1_2753F.1_g327920' => 'hma', 'HPP92_004446' => 'vpl', 'HPP92_004447' => 'vpl', 'HPP92_004448' => 'vpl', 'HPP92_004449' => 'vpl', 'HPP92_004450' => 'vpl', 'HPP92_004451' => 'vpl', 'HPP92_004453' => 'vpl', 'HPP92_004454' => 'vpl', 'HPP92_004739' => 'vpl', 'HPP92_004740' => 'vpl', 'HPP92_004741' => 'vpl', 'HPP92_023985' => 'vpl', 'HPP92_023999' => 'vpl', 'Hund12295' => 'sun', 'Hund12296' => 'sun', 'Hund17336' => 'sun', 'Hund17338' => 'sun', 'Hund21441' => 'sun', 'Hund23419' => 'sun', 'Hund23426' => 'sun', 'Hund26776' => 'sun', 'Lalb_Chr08g0241131' => 'lal', 'Lalb_Chr10g0105591' => 'lal', 'Lalb_Chr15g0087841' => 'lal', 'Lalb_Chr16g0390921' => 'lal', 'Lalb_Chr17g0347281' => 'lal', 'Lalb_Chr18g0056831' => 'lal', 'Lalb_Chr20g0119141' => 'lal', 'Lj1A1237T44' => 'lonja', 'Lj1C781T4' => 'lonja', 'Lj1g0010867' => 'lja', 'Lj1g0023012' => 'lja', 'Lj2g0019096' => 'lja', 'Lj4A309G56' => 'lonja', 'Lj4A682T57' => 'lonja', 'Lj4g0016667' => 'lja', 'Lj6g0012202' => 'lja', 'Lj7C348T0' => 'lonja', 'Lj7C348T1' => 'lonja', 'Lj7C348T2' => 'lonja', 'Lj7C348T3' => 'lonja', 'Lj7C349T10' => 'lonja', 'Lj7C349T11' => 'lonja', 'Lj7C349T9' => 'lonja', 'Lj7C350T1' => 'lonja', 'Lj7C350T5' => 'lonja', 'Lj8A130T56' => 'lonja', 'LjContig00029g0018500' => 'lja', 'LjContig00029g0027697' => 'lja', 'Lsat_1_v5_gn_5_123441' => 'lsa', 'Lsat_1_v5_gn_6_110021' => 'lsa', 'Lsat_1_v5_gn_6_110060' => 'lsa', 'Lsat_1_v5_gn_6_110120' => 'lsa', 'Lsat_1_v5_gn_7_14360' => 'lsa', 'Lsat_1_v5_gn_7_37541' => 'lsa', 'Lsat_1_v5_gn_9_105880' => 'lsa', 'Lsat_1_v5_gn_9_105960' => 'lsa', 'Manes.02G168000' => 'mes', 'Manes.03G032500' => 'mes', 'Manes.12G069300' => 'mes', 'Manes.13G065800' => 'mes', 'Manes.16G002300' => 'mes', 'Manes.18G082100' => 'mes', 'MBI03_g28483_MAGBIO' => 'mbi', 'MBI06_g35208_MAGBIO' => 'mbi', 'MBI16_g14300_MAGBIO' => 'mbi', 'MBI16_g26184_MAGBIO' => 'mbi', 'MBI19_g03673_MAGBIO' => 'mbi', 'MD05G1354000' => 'mdo', 'MD08G1160900' => 'mdo', 'MD09G1114800' => 'mdo', 'MD10G1328100' => 'mdo', 'MD15G1205100' => 'mdo', 'MD17G1106300' => 'mdo', 'Medtr2g025120' => 'mtr', 'Medtr3g083370' => 'mtr', 'Medtr3g088565' => 'mtr', 'Medtr4g132770' => 'mtr', 'Medtr5g085330' => 'mtr', 'Medtr6g092620' => 'mtr', 'MELO3C004619.2' => 'cme', 'MELO3C007425.2' => 'cme', 'MELO3C010508.2' => 'cme', 'MELO3C014437.2' => 'cme', 'MELO3C019735.2' => 'cme', 'Migut.C01063' => 'egut', 'Migut.H01595' => 'egut', 'Migut.J00596' => 'egut', 'Migut.J01066' => 'egut', 'Migut.M01363' => 'egut', 'Migut.N03262' => 'egut', 'MSTRG.14622' => 'ama', 'MSTRG.19525' => 'ama', 'MSTRG.7187' => 'ama', 'Nitab4.5_0000005g0070' => 'nta', 'Nitab4.5_0000091g0420' => 'nta', 'Nitab4.5_0000130g0130' => 'nta', 'Nitab4.5_0000130g0140' => 'nta', 'Nitab4.5_0000622g0170' => 'nta', 'Nitab4.5_0000987g0060' => 'nta', 'Nitab4.5_0001168g0160' => 'nta', 'Nitab4.5_0002045g0080' => 'nta', 'Nitab4.5_0003240g0040' => 'nta', 'Nitab4.5_0004330g0020' => 'nta', 'Nitab4.5_0004330g0030' => 'nta', 'Nitab4.5_0004645g0020' => 'nta', 'Nitab4.5_0004694g0070' => 'nta', 'Nitab4.5_0004821g0040' => 'nta', 'Nitab4.5_0006116g0010' => 'nta', 'Nitab4.5_0008174g0030' => 'nta', 'Nitab4.5_0009635g0010' => 'nta', 'Nitab4.5_0010222g0050' => 'nta', 'Nitab4.5_0010434g0040' => 'nta', 'Nn1g03374' => 'nnu', 'Nn1g07303' => 'nnu', 'Nn1g08965' => 'nnu', 'Nn5g28432' => 'nnu', 'Nn6g35441' => 'nnu', 'Nn8g38900' => 'nnu', 'Oeu000324.1' => 'oeu', 'Oeu007158.1' => 'oeu', 'Oeu021886.1' => 'oeu', 'Oeu024585.1' => 'oeu', 'Oeu025057.1' => 'oeu', 'Oeu049702.1' => 'oeu', 'Oeu049703.1' => 'oeu', 'Oeu049706.1' => 'oeu', 'Oeu049707.1' => 'oeu', 'Oeu049712.1' => 'oeu', 'Oeu049713.1' => 'oeu', 'Oeu051873.1' => 'oeu', 'Oeu051875.1' => 'oeu', 'Oeu051975.1' => 'oeu', 'Os01g0580500' => 'osa', 'Os02g0771600' => 'osa', 'Os05g0149300' => 'osa', 'Os05g0149400' => 'osa', 'Os06g0573900' => 'osa', 'Os09g0451000' => 'osa', 'Os09g0451400' => 'osa', 'Os11g0186900' => 'osa', 'Peaxi162Scf00047g01927' => 'pax', 'Peaxi162Scf00047g01928' => 'pax', 'Peaxi162Scf00051g00207' => 'pax', 'Peaxi162Scf00066g00009' => 'pax', 'Peaxi162Scf00141g00330' => 'pax', 'Peaxi162Scf00294g00812' => 'pax', 'Peaxi162Scf00521g00613' => 'pax', 'Peaxi162Scf01096g00025' => 'pax', 'Peaxi162Scf01176g00019' => 'pax', 'Peaxi162Scf01333g10015' => 'pax', 'Peaxi162Scf01333g10016' => 'pax', 'PGR042G0271' => 'pgr', 'PGR042G3180' => 'pgr', 'PGR102G0598' => 'pgr', 'PGR142G0100' => 'pgr', 'PGR142G1405' => 'pgr', 'PGSC0003DMG400002321' => 'stu', 'PGSC0003DMG400006025' => 'stu', 'PGSC0003DMG400011776' => 'stu', 'PGSC0003DMG400013894' => 'stu', 'PGSC0003DMG400016714' => 'stu', 'PGSC0003DMG400021476' => 'stu', 'Phvul.002G304200' => 'pvu', 'Phvul.002G326600' => 'pvu', 'Phvul.003G082300' => 'pvu', 'Phvul.006G144900' => 'pvu', 'Phvul.007G135600' => 'pvu', 'Phvul.008G213800' => 'pvu', 'Phvul.008G213914' => 'pvu', 'Phvul.008G214200' => 'pvu', 'Phvul.009G129500' => 'pvu', 'Potri.002G078600' => 'ptr', 'Potri.002G224100' => 'ptr', 'Potri.004G003000' => 'ptr', 'Potri.005G182700' => 'ptr', 'Potri.006G151600' => 'ptr', 'Potri.011G020900' => 'ptr', 'Potri.014G159000' => 'ptr', 'Prupe.1G490000' => 'ppe', 'Prupe.3G209900' => 'ppe', 'Prupe.4G013800' => 'ppe', 'Prupe.7G212000' => 'ppe', 'Psat1g050200' => 'psa', 'Psat1g177520' => 'psa', 'Psat2g025960' => 'psa', 'Psat5g084920' => 'psa', 'Psat5g101720' => 'psa', 'PSO063G3564' => 'pso', 'PSO210G2481' => 'pso', 'PSO386G0024' => 'pso', 'PSO541G5154' => 'pso', 'PSO675G1706' => 'pso', 'PSO832G3873' => 'pso', 'PSO832G4425' => 'pso', 'QL02p062927' => 'qlo', 'QL03p008106' => 'qlo', 'QL05p070154' => 'qlo', 'QL08p030483' => 'qlo', 'QL08p030520' => 'qlo', 'QL08p030580' => 'qlo', 'QL09p032570' => 'qlo', 'RcHm_v2.0_Chr2g0093091' => 'rch', 'RcHm_v2.0_Chr2g0158011' => 'rch', 'RcHm_v2.0_Chr5g0001831' => 'rch', 'RcHm_v2.0_Chr6g0296661' => 'rch', 'Rhsim03G0233400' => 'rsi', 'Rhsim06G0167500' => 'rsi', 'Rhsim11G0071100' => 'rsi', 'Rhsim13G0149200' => 'rsi', 'Sabra02G0061500' => 'sbr', 'Sabra02G0171600' => 'sbr', 'Sabra04G0001600' => 'sbr', 'Sabra05G0138500' => 'sbr', 'Sabra06G0120100' => 'sbr', 'Sabra11G0011000' => 'sbr', 'Sabra11G0012800' => 'sbr', 'Sabra14G0120800' => 'sbr', 'SalBow1G4249' => 'sbo', 'SalBow2G2360' => 'sbo', 'SalBow6G4946' => 'sbo', 'SalBow7G3567' => 'sbo', 'SalBow7G3734' => 'sbo', 'SalBow7G3767' => 'sbo', 'SalBow8G3234' => 'sbo', 'Sc02g0004750' => 'sci', 'Sc02g0004770' => 'sci', 'Sc06g0006970' => 'sci', 'Sc08g0008390' => 'sci', 'Sc17g0007610' => 'sci', 'Sed0002529' => 'sed', 'Sed0002967' => 'sed', 'Sed0009554' => 'sed', 'Sed0013672' => 'sed', 'Sed0015195' => 'sed', 'Sed0017690' => 'sed', 'Sed0019327' => 'sed', 'Sed0022023' => 'sed', 'Sed0024820' => 'sed', 'Sed0026245' => 'sed', 'SEGI_02166' => 'sgi', 'SEGI_02865' => 'sgi', 'SEGI_03028' => 'sgi', 'SEGI_05535' => 'sgi', 'SEGI_07488' => 'sgi', 'SEGI_08713' => 'sgi', 'SEGI_09278' => 'sgi', 'SEGI_09648' => 'sgi', 'SEGI_11564' => 'sgi', 'SEGI_12112' => 'sgi', 'SEGI_12290' => 'sgi', 'SEGI_15097' => 'sgi', 'SEGI_15663' => 'sgi', 'SEGI_17395' => 'sgi', 'SEGI_17987' => 'sgi', 'SEGI_19351' => 'sgi', 'SEGI_20086' => 'sgi', 'SEGI_20524' => 'sgi', 'SEGI_25861' => 'sgi', 'SEGI_27998' => 'sgi', 'SEGI_28172' => 'sgi', 'SEGI_30188' => 'sgi', 'SEGI_34379' => 'sgi', 'SEGI_35538' => 'sgi', 'SEGI_38836' => 'sgi', 'SEGI_39189' => 'sgi', 'SGA_v2.0_scaffold24G10425' => 'sas', 'SGA_v2.0_scaffold28G11971' => 'sas', 'SGA_v2.0_scaffold28G11972' => 'sas', 'SGA_v2.0_scaffold7G03790' => 'sas', 'SGA_v2.0_scaffold81G26144' => 'sas', 'SHI27951' => 'shi', 'SMO229G0030' => 'smo', 'Solyc02g036350.3' => 'sly', 'Solyc02g081190.4' => 'sly', 'Solyc06g060070.3' => 'sly', 'Solyc07g026650.3' => 'sly', 'Solyc07g049530.3' => 'sly', 'Solyc07g049550.3' => 'sly', 'Solyc12g005940.2' => 'sly', 'Sopen02g011720' => 'spe', 'Sopen02g025830' => 'spe', 'Sopen06g020190' => 'spe', 'Sopen07g014300' => 'spe', 'Sopen07g024880' => 'spe', 'Sopen07g024890' => 'spe', 'Sopen07g024910' => 'spe', 'Sopen12g001890' => 'spe', 'Sp1g03890' => 'spa', 'Sp1g10680' => 'spa', 'Sp3g32970' => 'spa', 'Sp5g32510' => 'spa', 'SpUn0981_0010' => 'spa', 'SpUn1491_0010' => 'spa', 'TAR020G0007' => 'tar', 'TAR223G0001' => 'tar', 'TAR376G0754' => 'tar', 'TAR376G0918' => 'tar', 'TAR626G1206' => 'tar', 'TAR626G1296' => 'tar', 'TAR628G1084' => 'tar', 'TAR629G3090' => 'tar', 'THA.LOC104801008' => 'tha', 'THA.LOC104801879' => 'tha', 'THA.LOC104809474' => 'tha', 'THA.LOC104812086' => 'tha', 'THA.LOC104818598' => 'tha', 'Thecc.01G182600' => 'tca', 'Thecc.06G229700' => 'tca', 'Thecc.08G132600' => 'tca', 'Thecc.09G091500' => 'tca', 'Thecc.09G091600' => 'tca', 'Thhalv10002047m.g' => 'esa', 'Thhalv10008207m.g' => 'esa', 'Thhalv10008225m.g' => 'esa', 'Thhalv10018919m.g' => 'esa', 'Thhalv10023595m.g' => 'esa', 'TPR.G13459' => 'tpr', 'TPR.G19325' => 'tpr', 'TPR.G25649' => 'tpr', 'TPR.G27289' => 'tpr', 'TPR.G35495' => 'tpr', 'TPR.G37011' => 'tpr', 'TWI18G0326' => 'twi', 'TWI36G0508' => 'twi', 'TWI38G0632' => 'twi', 'TWI60G1646' => 'twi', 'TWI63G0461' => 'twi', 'TWI63G1432' => 'twi', 'unitig_26.g9401' => 'ugi', 'vmacro00859' => 'vma', 'vmacro03658' => 'vma', 'vmacro06282' => 'vma', 'vmacro12160' => 'vma', 'VMungo0251G0940' => 'vmu', 'VMungo0251G1604' => 'vmu', 'VMungo0464G0154' => 'vmu', 'VMungo0540G0636' => 'vmu', 'VMungo0647G2511' => 'vmu', 'VMungo1215G1100' => 'vmu', 'VMungo1309G0387' => 'vmu', 'Zm00001eb091080' => 'zma', 'Zm00001eb101110' => 'zma', 'Zm00001eb193360' => 'zma', 'Zm00001eb201390' => 'zma', 'Zm00001eb236480' => 'zma', 'Zm00001eb277290' => 'zma', 'Zm00001eb279410' => 'zma', 'Zm00001eb314610' => 'zma', 'Zm00001eb357070' => 'zma', 'Zm00001eb388920' => 'zma', 'Zm00001eb418090' => 'zma', 'Zm00001eb418130' => 'zma', 'Zm00001eb418140' => 'zma' ) $gf_id = 'HOM05D000787' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000787' ) $data_identifier = 'HOM05D000787' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 13, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 23, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 26, 'gra' => (int) 14, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 8, 'lal' => (int) 7, 'lonja' => (int) 14, 'lja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 6, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 19, 'nnu' => (int) 6, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 7, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 26, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1